PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.10862s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 566aa    MW: 64305.6 Da    PI: 4.7136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.10862s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.7e-13316361555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + ++ErrRR+++N+++  Lr+l+P       +Kl+ a+iL  A++Y+k+Lq
  Cagra.10862s0002.1.p 316 NLMAERRRRKKLNDRLYALRSLVPRI-----TKLDRASILGDAINYVKELQ 361
                           5589*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.0E-1810148IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.323311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-14313363No hitNo description
SuperFamilySSF474592.09E-17315376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10316361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-16317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-17318374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWIG CCCGGTELIA ENGTEEFSFG  60
SCRDVMFHHP RTKSCEFLSH LPSSIPLDSG IYAETLLTNQ TGWLSESSEP SFMQETICTR  120
VLIPISGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDETV TINMMVGDEV ESKPYGMLSG  180
EINQKGSKDE DMMNLPSSYD VSADQMRLNF LPQISDYEGQ QHLKMKSDYH HETLGYLQEN  240
GNKEMMGMNP FNTMAEDGIP VIGEPSLLVN EQQVANDKEM NENGRLDSGS DCSDQIDDED  300
DPKYKKKSGK ISQAKNLMAE RRRRKKLNDR LYALRSLVPR ITKLDRASIL GDAINYVKEL  360
QNEAKELQDE LEENSETEDG SNRQQGGMSL NGTVVTGFHP GLSCNSNIPN VKQDVDLDNS  420
NDKGQEMEPQ VDVAQLDGRE FFVKVICEYK PGGFTRLMEA LDSLGLEVTN ANTTRYLSLV  480
SNVFKVEKSD NEMVQAEHVR NSLLEITRNT SRGWQDDQMA TGSMQNEKND VDYQHYDDHQ  540
HHHHPFDHQM NHHHHQHINH YHNNQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304325KKKSGKISQAKNLMAERRRRKK
2319326ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5119910.0AJ511991.1 Brassica napus mRNA for bHLH transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300017.10.0hypothetical protein CARUB_v10016240mg
SwissprotQ9ZVX20.0AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLR0I4J30.0R0I4J3_9BRAS; Uncharacterized protein
STRINGAT2G16910.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.10.0bHLH family protein